Alignment of alleles: Chimpanzee (Pan troglodytes) IGHG1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

The nucleotide between parentheses at the beginning of exons comes from a DONOR-SPLICE (n from ngt). The first nucleotide from an INT-DONOR-SPLICE is underlined (n from ngt).

Exon names are shown between parentheses on the first line.
The Cysteines involved in the IG CH1, CH2 and CH3 intrachain disulfide bridge are shown with a larger letter C in purple. The Cysteines involved in the H-L or H-H interchain disulfide bridge are shown with a larger letter C in black.
STOP-CODON is indicated by an asterisk.

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                                     1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                      A   S   T   K   G   P   S   V   F   P   L   A   P   S   S
  X65284  ,IGHG1*01,(cDNA) (CH1)                   (G)CC TCC ACC AAG GGC CCA TCG GTC TTC CCC CTG GCG CCC TCC TCC

  AF300437,IGHG1*02

                                                 ___AB_______                                            ________
                                                15.1    15.3                                                    
                                  12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                  K   S   T   S               G   G   T   Q   A   L   G   C   L   V   K   D   Y
  X65284  ,IGHG1*01,(cDNA) (CH1) AAG AGC ACC TCT ... ... ... GGG GGC ACA CAG GCC CTG GGC TGC CTG GTC AAG GAC TAC

  AF300437,IGHG1*02

                                 _________BC_____________________                            ___________CD_______
                                                                                            45.1    45.3    45.5
                                  29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                  F   P           E   P   V   T   V   S   W   N   S   G   A   L   T   S
  X65284  ,IGHG1*01,(cDNA) (CH1) TTC CCC ... ... GAA CCG GTG ACC GTG TCG TGG AAC TCA GGC GCC CTG ACC AGC ... ...

  AF300437,IGHG1*02

                                 ________                                _________________________DE_____________
                                    45.7                                84.1    84.3    84.5    84.7    85.6    
                                45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                          G   V   H   T   F   P   A   V   L   Q   S   S
  X65284  ,IGHG1*01,(cDNA) (CH1) ... ... GGC GTG CAC ACC TTC CCG GCT GTC CTA CAA TCC TCA ... ... ... ... ... ...

  AF300437,IGHG1*02                                              --- --- --- --G --- --- ... ... ... ... ... ...

                                 ________________                                                _EF_____
                                85.4    85.2                                                    96.1    
                                    85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                  G   L   Y   S   L   S   S   V   V   T   V   P   S   S   S   L               G
  X65284  ,IGHG1*01,(cDNA) (CH1) GGA CTC TAC TCC CTC AGC AGC GTG GTG ACC GTG CCC TCC AGC AGC TTG ... ... ... GGC

  AF300437,IGHG1*02              --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ---

                                                         _______________________FG___________________________
                                                                                                            
                                  99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                  T   Q   T   Y   I   C   N   V   D   H   K   P           S   N   T   K   V   D
  X65284  ,IGHG1*01,(cDNA) (CH1) ACC CAG ACC TAC ATC TGC AAT GTA GAT CAC AAG CCC ... ... AGC AAC ACC AAG GTG GAC

  AF300437,IGHG1*02              --- --- --- --- --- --- --C --- --- --- --- --- ... ... --- --- --- --- --- ---


                                 119 120 121
                                  K   K   V
  X65284  ,IGHG1*01,(cDNA) (CH1) AAG AAA GTT G

  AF300437,IGHG1*02              --- --- --- -



                                   1   2   3   4   5   6   7   8   9  10  11  12  13  14  15
                                  E   P   K   S   C   D   T   T   H   T   C   P   P   C   A
  X65285  ,IGHG1*01,(cDNA) (H)    AG CCC AAA TCT TGT GAC ACA ACT CAT ACA TGC CCA CCA TGC GCA G

  AF300437,IGHG1*02               -- --- --- --- --- --- --- --- --C --- --- --- --- --- --- -




                                             1.6 1.5 1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                              A   P   E   L   L   G   G   P   S   V   F   L   F   P   P   K   P
  X61311  ,IGHG1*01,(cDNA) (CH2)              CA CCT GAA CTC CTG GGG GGA CCG TCA GTC TTC CTC TTC CCC CCA AAA CCC

  AF300437,IGHG1*02                           -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---

                                                 ___AB_______                                            ________
                                                15.1    15.3                                                    
                                  12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                  K   D   T   L   M   I       S   R   T   P   E   V   T   C   V   V   V   D   V
  X61311  ,IGHG1*01,(cDNA) (CH2) AAG GAC ACC CTC ATG ATC ... TCC CGG ACC CCT GAG GTC ACG TGC GTG GTG GTG GAT GTG

  AF300437,IGHG1*02              --- --- --- --- --- --- ... --- --- --- --- --- --- --A --- -

                                 _________BC_____________________                            ___________CD_______
                                                                                            45.1    45.3    45.5
                                  29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                  S   H   E   D   P   E   V   K   F   N   W   Y   V   D   G   V   E   V   H
  X61311  ,IGHG1*01,(cDNA) (CH2) AGC CAC GAA GAC CCT GAG GTC AAG TTC AAC TGG TAC GTG GAC GGC GTG GAG GTG CAT ...

                                 ________                                _________________________DE_____________
                                    45.7                                84.1    84.3    84.5    84.7    85.6    
                                45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                          N   A   K   T   K   P   R   E   E   Q   Y   N
  X61311  ,IGHG1*01,(cDNA) (CH2) ... ... AAT GCC AAG ACA AAG CCG CGG GAG GAG CAG TAC AAC ... ... ... ... ... ...

                                 ________________                                                _EF_____
                                85.4    85.2                                                    96.1    
                                    85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                  S   T   Y   R   V   V   S   V   L   T   V   L   H   Q   D   W           L   N
  X61311  ,IGHG1*01,(cDNA) (CH2) AGC ACG TAC CGT GTG GTC AGC GTC CTC ACT GTC CTG CAC CAG GAC TGG ... ... CTG AAT

                                                         _______________________FG___________________________
                                                                                                            
                                  99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                  G   K   E   Y   K   C   K   V   S   N   K   A           L   P   A   P   I   E
  X61311  ,IGHG1*01,(cDNA) (CH2) GGC AAG GAG TAC AAG TGC AAG GTC TCC AAC AAA GCC ... ... CTC CCA GCC CCC ATC GAG


                                 119 120 121 122 123 124 125
                                  K   T   I   S   K   A   K
  X61311  ,IGHG1*01,(cDNA) (CH2) AAA ACC ATC TCC AAA GCC AAA G




                                                     1.4 1.3 1.2 1.1   1   2   3   4   5   6   7   8   9  10  11
                                                      G   Q   P   R   E   P   Q   V   Y   T   L   P   P   S   R
  X61310  ,IGHG1*01,(cDNA) (CH3)                      GG CAG CCC CGA GAA CCA CAG GTG TAC ACC CTG CCC CCA TCC CGG

                                                 ___AB_______                                            ________
                                                15.1    15.3                                                    
                                  12  13  14  15    15.2      16  17  18  19  20  21  22  23  24  25  26  27  28
                                  D   E   L   T               K   N   Q   V   S   L   T   C   L   V   K   G   F
  X61310  ,IGHG1*01,(cDNA) (CH3) GAT GAG CTG ACC ... ... ... AAG AAC CAG GTC AGC CTG ACC TGC CTG GTC AAA GGC TTC

                                 _________BC_____________________                            ___________CD_______
                                                                                            45.1    45.3    45.5
                                  29  30  31  32  33  34  35  36  39  40  41  42  43  44  45    45.2    45.4    
                                  Y   P           S   D   I   A   V   E   W   E   S   S   G   Q   P   E   N
  X61310  ,IGHG1*01,(cDNA) (CH3) TAT CCC ... ... AGC GAC ATC GCC GTG GAG TGG GAG AGC AGT GGG CAG CCG GAG AAC ...

                                 ________                                _________________________DE_____________
                                    45.7                                84.1    84.3    84.5    84.7    85.6    
                                45.6      77  78  79  80  81  82  83  84    84.2    84.4    84.6    85.7    85.5
                                          N   Y   K   T   T   P   P   V   L   D   S   D
  X61310  ,IGHG1*01,(cDNA) (CH3) ... ... AAC TAC AAG ACA ACG CCT CCC GTG CTG GAC TCC GAC ... ... ... ... ... ...

                                 ________________                                                _EF_____
                                85.4    85.2                                                    96.1    
                                    85.3    85.1  85  86  87  88  89  90  91  92  93  94  95  96    96.2  97  98
                                  G   S   F   F   L   Y   S   K   L   T   V   D   K   S   R   W           Q   Q
  X61310  ,IGHG1*01,(cDNA) (CH3) GGC TCC TTC TTC CTC TAC AGC AAG CTC ACC GTG GAC AAG AGC AGG TGG ... ... CAG CAG

                                                         _______________________FG___________________________
                                                                                                            
                                  99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
                                  G   N   V   F   S   C   S   V   M   H   E   A       L   H   N   H   Y   T   Q
  X61310  ,IGHG1*01,(cDNA) (CH3) GGG AAC GTC TTC TCA TGC TCC GTG ATG CAT GAG GCT ... CTG CAC AAC CAC TAC ACG CAG


                                 119 120
                                  K   S
  X61310  ,IGHG1*01,(cDNA) (CH3) AAG AGC C



This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 12/11/2002
Author: Nathalie Bosc